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Sample GSM220219 Query DataSets for GSM220219
Status Public on Nov 12, 2007
Title vervet magnocellular layer 3
Sample type RNA
 
Source name lateral geniculate nucleus magnocellular heterogeneous layer
Organism Chlorocebus aethiops vervet
Characteristics Adult male vervet monkey (Cercopithecus aethipos), internal identifier number 05-1-4.
Treatment protocol normal animals
Extracted molecule total RNA
Extraction protocol Laser-capture microdissected heterogeneous layer (mixture of neuronal cell bodies, neuropil, glia) from the magnocellular layer of the Lateral Geniculate Nucleus. Cells identified by cresyl violet staining.
Sample consists of roughly 3000 pulses from LCM, total RNA amplified through two rounds using the Affymetrix system.
Label biotin
Label protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
 
Hybridization protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
Scan protocol Standard Affymetrix protocol, processed at the McGill University and Genome Quebec Innovation Center.
Description vervet monkey samples cross-species hybridized to the Rhesus Macaque Genome Array (Affymetrix)
Data processing CHP file obtained from MAS 5.0
 
Submission date Aug 23, 2007
Last update date Aug 14, 2011
Contact name Pascal Lachance
Organization name McGill University
Department Psychology
Lab Chaudhuri Vision Laboratory
Street address 1205 Ave. Dr. Penfield
City Montreal
State/province QC
ZIP/Postal code H3A1B1
Country Canada
 
Platform ID GPL3535
Series (1)
GSE8859 Laser capture microdissected vervet monkey lateral geniculate nucleus hybridized to the Rhesus Macaque Genome Array.

Data table header descriptions
ID_REF
VALUE expression value
ABS_CALL absolute call
DETECTION P-VALUE detection p value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 181.638 P 0.000445901
AFFX-BioB-M_at 293.038 P 4.42873e-05
AFFX-BioB-3_at 188.88 P 4.42873e-05
AFFX-BioC-5_at 545.33 P 4.42873e-05
AFFX-BioC-3_at 639.208 P 4.42873e-05
AFFX-BioDn-5_at 1373.06 P 4.42873e-05
AFFX-BioDn-3_at 2032.41 P 6.02111e-05
AFFX-CreX-5_at 5999.95 P 5.16732e-05
AFFX-CreX-3_at 6938.11 P 4.42873e-05
AFFX-DapX-5_at 35.725 P 0.000340305
AFFX-DapX-M_at 401.309 P 0.000146581
AFFX-DapX-3_at 1578.62 P 4.42873e-05
AFFX-LysX-5_at 6.13541 M 0.0629293
AFFX-LysX-M_at 50.8186 P 0.000753643
AFFX-LysX-3_at 165.543 P 4.42873e-05
AFFX-PheX-5_at 17.1572 P 0.00227496
AFFX-PheX-M_at 94.1563 P 5.16732e-05
AFFX-PheX-3_at 239.618 P 4.42873e-05
AFFX-ThrX-5_at 12.9943 A 0.15671
AFFX-ThrX-M_at 85.2364 P 0.00110197

Total number of rows: 52865

Table truncated, full table size 2125 Kbytes.




Supplementary file Size Download File type/resource
GSM220219.CEL.gz 7.9 Mb (ftp)(http) CEL
GSM220219.CHP.gz 13.9 Mb (ftp)(http) CHP
GSM220219.EXP.gz 353 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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