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Sample GSM22366 Query DataSets for GSM22366
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 59
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 59 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=59;Tumor.type=L;Size=3;Grade=2;Nodes=33/38;ER=Pos;PR=Pos;HER2=ID (+2);Age=70;DFS=21;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.4277413 3499.0 3519.5 1.3451261257825555
6459 0.1267343 749.5 366.0 1.0918190241013574
16790 -0.6036683 200.0 79.5 0.6580788602368811
4210 0.2056573 136.0 99.0 1.1532115519500485
13392 -0.6869913 3351.0 1354.5 0.6211479752109396
1575 0.2321953 122.0 94.5 1.1746210346924044
9300 0.3456443 197.0 134.5 1.2707177096842996
5306 0.2812853 154.0 111.0 1.2152768453883611
4514 0.2677413 142.0 105.0 1.2039209955256738
8664 -0.2029543 141.0 81.0 0.8687700308070582
1645 0.2741443 235.0 145.5 1.209276407955373
13828 0.2428433 143.0 104.0 1.1833218388699913
3944 -0.2245863 128.0 76.0 0.8558406567378485
500 0.3830593 1886.0 1502.0 1.3041044584866563
21226 0.5633813 211.0 160.0 1.477728326571501
15545 -2.5080073 1489.5 116.0 0.17579826259527678
6346 -0.2032503 388.0 158.5 0.8685915113358164
4381 0.3139413 106.0 91.5 1.243098429559639
3385 -0.9627393 3882.0 1318.0 0.5130819539046115
19553 0.4159753 139.0 112.5 1.3341999680701535

Total number of rows: 22575

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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