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Status |
Public on Feb 18, 2019 |
Title |
KCNK3 KO (UBC) [3441-SG8] |
Sample type |
SRA |
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Source name |
Lung
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Organism |
Mus musculus |
Characteristics |
strain: BL/6 gender: pooled male and female genotype: KCNK3 KO (UBC) treatment: Hypoxic
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Extracted molecule |
polyA RNA |
Extraction protocol |
RNA was extracted from mice kidneys with a Qiagen RNEasy kit RNA libraries were prepared for sequencing using standard Illumina protocols
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Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 3000 |
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Description |
gender: M,M,F
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Data processing |
alignment with STAR v 2.5.1b, controlling for unannotated, non-canonical and rare junctions read count generation during STAR alignment using –quantmode GeneCounts option that works like HTSeq-Count in default mode Genome_build: Mus musculus GRCm38.p4 Supplementary_files_format_and_content: txt files, raw read counts output from STAR alignment using option -–quantmode GeneCounts
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Submission date |
Jul 15, 2016 |
Last update date |
May 15, 2019 |
Contact name |
James West |
E-mail(s) |
j.west@vanderbilt.edu
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Organization name |
Vanderbilt University
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Department |
Medicine
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Lab |
Allergy, Pulmonary and Critical Care
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Street address |
4200 E 9TH Ave, Box B133
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City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37201 |
Country |
USA |
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Platform ID |
GPL21493 |
Series (1) |
GSE84454 |
Effect of KCNK3 mutations on hypoxic mice lungs studied by RNASeq |
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Relations |
BioSample |
SAMN05393180 |
SRA |
SRX1951055 |
Supplementary file |
Size |
Download |
File type/resource |
GSM2236604_3441-SG-8ReadsPerGene.out.tab.gz |
294.6 Kb |
(ftp)(http) |
TAB |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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