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Sample GSM22367 Query DataSets for GSM22367
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 68
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 68 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=68;Tumor.type=D;Size=3;Grade=2;Nodes=0/17;ER=Pos;PR=Pos;HER2=Neg;Age=53;DFS=38;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.0073413 4070.0 2389.5 0.4974621841611613
6459 1.2594453 913.5 2094.5 2.394036298143463
16790 -0.2308083 302.0 108.5 0.8521577163636327
4210 -0.2675253 319.0 114.0 0.8307434119935054
13392 -0.1276523 3482.0 3894.0 0.9153196564200677
1575 0.1970773 353.0 198.0 1.1463730883470562
9300 -0.1224813 391.0 175.0 0.9186067722049596
5306 -0.0564293 280.5 113.0 0.9616411795961365
4514 -0.3084533 305.0 103.0 0.8075071654288764
8664 0.5784663 312.5 229.5 1.4932610213938167
1645 0.8430533 512.5 617.5 1.793842558588757
13828 1.2232943 310.0 398.0 2.334792379950029
3944 -0.2008713 294.0 107.0 0.8700251931317153
500 -0.5577203 2186.0 1539.0 0.6793749733385214
21226 0.8474413 205.0 154.5 1.7993063359095403
15545 -0.3461593 1590.0 1197.0 0.7866758989902465
6346 -0.0045743 521.0 300.0 0.9968346545029847
4381 0.2008643 216.5 96.5 1.149386550055072
3385 -0.7183133 4445.0 3330.0 0.6078077317055864
19553 0.1146493 263.0 119.0 1.0827112551712477

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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