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Sample GSM22368 Query DataSets for GSM22368
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 140
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 140 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=140;Tumor.type=L;Size=>2.0;Grade=2;Nodes=18/28;ER=Pos;PR=Pos;HER2=Neg;Age=63;DFS=43;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.2196273 3824.0 4945.5 1.1644321808186344
6459 -1.3663503 878.0 280.0 0.38787143610103086
16790 1.9372093 220.5 686.5 3.829639780642391
4210 0.1201293 186.5 159.5 1.0868321068756974
13392 0.2964783 3075.0 4029.0 1.2281424325353467
1575 0.2843613 232.0 225.0 1.217870887225073
9300 0.6896573 270.0 351.0 1.612899688071329
5306 0.3276223 194.0 192.5 1.2549435466739243
4514 0.1049323 163.5 137.5 1.0754433465778803
8664 0.4298823 207.5 222.0 1.3471232973497274
1645 0.3020103 307.0 305.0 1.2328611721878115
13828 0.5821843 218.5 261.0 1.4971135483835822
3944 0.0805673 191.0 159.0 1.0574332220109912
500 -0.1443423 2328.0 2047.5 0.9047921412870158
21226 0.3504413 426.0 444.0 1.2749506717305081
15545 -2.9089373 1660.5 182.5 0.13314436220077552
6346 0.5028033 505.0 590.5 1.4169643085148513
4381 0.2103843 177.0 161.0 1.1569957212703732
3385 -0.0737353 3245.0 3235.0 0.9501745939212518
19553 0.9247423 261.0 400.0 1.898344811988535

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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