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Sample GSM22369 Query DataSets for GSM22369
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 180
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 180 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=180;Tumor.type=D;Size=1.6;Grade=2;Nodes=2/19;ER=Pos;PR=Pos;HER2=Neg ;Age=69;DFS=169;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.3442273 5055.0 7628.5 1.269470751624072
6459 -0.9850063 867.0 344.0 0.5052235832492574
16790 0.0940133 374.0 298.0 1.0673347409449718
4210 0.2220513 160.0 129.0 1.1663904962925407
13392 -0.6018113 2697.0 1761.5 0.6589262692928954
1575 0.2571273 185.5 155.5 1.1950967975674076
9300 0.2192403 212.5 175.5 1.1641204398708536
5306 -0.1341863 181.0 114.0 0.9111840183905859
4514 -0.0302683 173.0 117.0 0.9792382947109702
8664 1.6631803 171.0 395.0 3.1671395588726607
1645 0.6481423 352.5 418.0 1.5671488780907188
13828 0.6557623 198.0 223.0 1.5754476787717913
3944 -0.0648933 168.0 110.5 0.9560159768524744
500 -0.3132873 2165.0 1685.0 0.8048060880210364
21226 0.7296753 310.0 385.0 1.658265652149306
15545 -1.5040913 1949.0 590.0 0.35255229330210813
6346 0.1661813 418.5 355.5 1.1220840340204483
4381 0.4344703 136.0 126.0 1.3514141631259926
3385 -0.3704393 4936.0 4341.0 0.7735469348514052
19553 0.7223523 191.0 225.0 1.649869075046894

Total number of rows: 22575

Table truncated, full table size 1060 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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