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Sample GSM22370 Query DataSets for GSM22370
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 260
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 260 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=260;Tumor.type=D/L;Size=0.9;Grade=2;Nodes=1/13;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=42;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.2832113 3389.0 4776.5 0.8217599954556769
6459 -0.5380743 820.0 519.5 0.6886895260418832
16790 2.3189243 182.0 777.0 4.989598389188565
4210 -0.0681093 135.5 109.5 0.9538877765956368
13392 0.3564073 2553.0 5497.0 1.2802332928590587
1575 0.1956983 127.0 123.0 1.1452781777485936
9300 0.4968633 173.5 203.5 1.411141865277397
5306 0.4829433 159.0 185.0 1.39759189177219
4514 0.1861203 139.0 133.0 1.137700161715225
8664 -0.0902623 137.0 109.0 0.9393520459901838
1645 0.5781683 203.0 252.0 1.4929526758043665
13828 0.2092373 140.0 136.0 1.156076423949823
3944 1.2219853 169.0 328.0 2.3326743991150445
500 -0.5434173 1781.0 1584.5 0.686143980951222
21226 0.3421683 187.0 197.0 1.2676601631907314
15545 -2.7855123 1137.5 142.0 0.14503650481752886
6346 0.2479943 382.0 389.0 1.1875550111397402
4381 0.7378733 213.0 296.0 1.667715332243177
3385 -0.9635023 2999.0 2311.5 0.5128104627587968
19553 0.6269593 134.0 173.0 1.5443061226632167

Total number of rows: 22575

Table truncated, full table size 1058 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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