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Sample GSM22371 Query DataSets for GSM22371
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 280
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 280 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=280;Tumor.type=D;Size=2.2;Grade=3;Nodes=0/12;ER=Pos;PR=Pos;HER2=Neg;Age=66;DFS=44;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.4686223 3738.5 1978.5 0.7226543053420774
6459 -0.2420853 813.0 318.0 0.8455224742348525
16790 -0.8006263 158.0 73.0 0.5740998422187895
4210 0.0796063 123.0 102.0 1.0567294021102531
13392 -0.4421053 2961.0 1468.0 0.7360598211376571
1575 0.2802903 116.0 110.0 1.2144390630832904
9300 0.1753733 137.0 114.0 1.1292563893273115
5306 0.5991853 131.0 140.0 1.5148609250296647
4514 0.3474073 95.0 102.5 1.272271532298158
8664 -0.1704873 112.0 85.0 0.8885425823532309
1645 0.1815453 175.0 132.0 1.1340980464233157
13828 0.1729773 106.0 99.0 1.1273822048626663
3944 0.0381453 110.0 94.0 1.0267930221373363
500 -0.3866223 2059.0 936.0 0.7649186610898578
21226 0.7680173 167.0 178.0 1.7029270733012314
15545 -1.6058893 1348.0 205.0 0.3285331880933028
6346 0.0587883 371.0 203.0 1.0415901507334122
4381 0.3531643 102.5 107.0 1.2773592858319227
3385 -2.1120613 3275.0 434.0 0.23131638897776854
19553 0.4209083 89.0 103.0 1.3387697936604128

Total number of rows: 22575

Table truncated, full table size 1049 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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