NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM22373 Query DataSets for GSM22373
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 295
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 295 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=295;Tumor.type=D;Size=3.5;Grade=2;Nodes=3/21;ER=Pos;PR=Pos;HER2=Neg;Age=52;DFS=118;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.7358653 3559.0 789.5 0.30022893416418517
6459 -0.6182473 606.0 236.5 0.651461927462643
16790 -0.4134033 178.0 101.0 0.7508503972186094
4210 0.0765473 212.0 156.5 1.0544913306401813
13392 -0.2350343 2804.0 1996.0 0.8496648068258492
1575 0.2975973 136.0 127.0 1.2290955761024542
9300 0.4845213 176.0 174.0 1.399121590587311
5306 0.6655263 165.0 185.0 1.5861464093417657
4514 0.0298493 150.5 116.5 1.0209049312528535
8664 0.2092273 137.0 121.0 1.1560683023818108
1645 -0.0447773 221.0 150.0 0.9694396297908056
13828 0.5301073 144.0 153.0 1.4440367197918
3944 0.6546333 226.0 236.0 1.5742152943790484
500 0.0706133 1768.0 1332.0 1.0501627914063736
21226 0.7167853 195.0 218.0 1.6435154285128464
15545 -2.7852303 1290.0 112.0 0.14506481193450002
6346 0.5361503 361.0 321.5 1.4500974468626633
4381 0.4943063 132.0 140.0 1.4086434385445314
3385 -0.7476603 3151.0 1529.5 0.5955689122444616
19553 1.0626673 153.0 223.0 2.0887893788996585

Total number of rows: 22575

Table truncated, full table size 1054 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap