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GEO accession:
Sample GSM22373
Query DataSets for GSM22373
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 295
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 295 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=295;Tumor.type=D;Size=3.5;Grade=2;Nodes=3/21;ER=Pos;PR=Pos;HER2=Neg;Age=52;DFS=118;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.7358653
3559.0
789.5
0.30022893416418517
6459
-0.6182473
606.0
236.5
0.651461927462643
16790
-0.4134033
178.0
101.0
0.7508503972186094
4210
0.0765473
212.0
156.5
1.0544913306401813
13392
-0.2350343
2804.0
1996.0
0.8496648068258492
1575
0.2975973
136.0
127.0
1.2290955761024542
9300
0.4845213
176.0
174.0
1.399121590587311
5306
0.6655263
165.0
185.0
1.5861464093417657
4514
0.0298493
150.5
116.5
1.0209049312528535
8664
0.2092273
137.0
121.0
1.1560683023818108
1645
-0.0447773
221.0
150.0
0.9694396297908056
13828
0.5301073
144.0
153.0
1.4440367197918
3944
0.6546333
226.0
236.0
1.5742152943790484
500
0.0706133
1768.0
1332.0
1.0501627914063736
21226
0.7167853
195.0
218.0
1.6435154285128464
15545
-2.7852303
1290.0
112.0
0.14506481193450002
6346
0.5361503
361.0
321.5
1.4500974468626633
4381
0.4943063
132.0
140.0
1.4086434385445314
3385
-0.7476603
3151.0
1529.5
0.5955689122444616
19553
1.0626673
153.0
223.0
2.0887893788996585
Total number of rows:
22575
Table truncated, full table size
1054 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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