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GEO accession:
Sample GSM22374
Query DataSets for GSM22374
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 297
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 297 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=297;Tumor.type=D;Size=0.8;Grade=2;Nodes=1/16;ER=Pos;PR=Pos;HER2=ND;Age=66;DFS=169;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.2320153
4057.0
1700.5
0.4257224358175924
6459
-0.3285483
921.0
535.0
0.7963375247810969
16790
-0.7959253
213.0
99.0
0.5759735690909256
4210
0.0007263
155.0
125.5
1.0005033182367615
13392
0.5728543
3128.0
5177.0
1.487463448148365
1575
0.1622783
205.5
181.5
1.1190525091601273
9300
0.2697703
274.0
255.0
1.205615429725643
5306
0.6286533
226.0
271.0
1.5461205444262505
4514
0.3080793
190.5
186.5
1.2380581152964019
8664
-0.1902663
197.0
138.0
0.8764442814366152
1645
1.2132203
277.5
485.5
2.3185460323132396
13828
0.3121443
174.0
172.0
1.2415517074964144
3944
0.1361763
237.5
204.0
1.0989881941067021
500
-0.6397193
2461.0
1420.5
0.6418377529437062
21226
1.0684333
270.0
429.0
2.0971540138391322
15545
-1.1804423
1493.0
488.0
0.44121617697240106
6346
-0.4907583
434.0
235.0
0.7116509126301978
4381
0.4370223
161.0
174.0
1.3538072602348157
3385
-0.6765283
3709.0
2369.0
0.6256690580452864
19553
0.8543063
289.0
396.0
1.8078886317354987
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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