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Sample GSM22374 Query DataSets for GSM22374
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 297
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 297 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=297;Tumor.type=D;Size=0.8;Grade=2;Nodes=1/16;ER=Pos;PR=Pos;HER2=ND;Age=66;DFS=169;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.2320153 4057.0 1700.5 0.4257224358175924
6459 -0.3285483 921.0 535.0 0.7963375247810969
16790 -0.7959253 213.0 99.0 0.5759735690909256
4210 0.0007263 155.0 125.5 1.0005033182367615
13392 0.5728543 3128.0 5177.0 1.487463448148365
1575 0.1622783 205.5 181.5 1.1190525091601273
9300 0.2697703 274.0 255.0 1.205615429725643
5306 0.6286533 226.0 271.0 1.5461205444262505
4514 0.3080793 190.5 186.5 1.2380581152964019
8664 -0.1902663 197.0 138.0 0.8764442814366152
1645 1.2132203 277.5 485.5 2.3185460323132396
13828 0.3121443 174.0 172.0 1.2415517074964144
3944 0.1361763 237.5 204.0 1.0989881941067021
500 -0.6397193 2461.0 1420.5 0.6418377529437062
21226 1.0684333 270.0 429.0 2.0971540138391322
15545 -1.1804423 1493.0 488.0 0.44121617697240106
6346 -0.4907583 434.0 235.0 0.7116509126301978
4381 0.4370223 161.0 174.0 1.3538072602348157
3385 -0.6765283 3709.0 2369.0 0.6256690580452864
19553 0.8543063 289.0 396.0 1.8078886317354987

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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