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Sample GSM22375 Query DataSets for GSM22375
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 317
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 317 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=317;Tumor.type=D;Size=1.2;Grade=3;Nodes=1/10;ER=Pos;PR=Neg;HER2=Neg;Age=71;DFS=5;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.6156133 4297.0 2589.5 0.6526525148269904
6459 -0.5829873 824.0 326.0 0.6675802454541714
16790 -0.2432873 189.5 115.0 0.844818136608549
4210 0.0297703 127.5 101.0 1.020849619314753
13392 0.0328523 3659.0 3547.5 1.0230327699409463
1575 0.2636073 108.0 103.0 1.2004762913221
9300 0.3460233 158.0 143.5 1.2710515411461198
5306 0.0975163 149.0 118.0 1.0699293973180863
4514 -0.0104913 122.0 95.5 0.9927542393048353
8664 0.4909953 122.0 129.0 1.4054136382523859
1645 1.2605693 186.5 289.5 2.3959024309306627
13828 0.0799373 119.0 99.0 1.0569717819735116
3944 0.1217903 125.5 105.5 1.0880839937460478
500 -0.3474523 2091.0 1203.0 0.7859711417748154
21226 1.0173073 177.0 238.0 2.0241365490702776
15545 -1.9678083 1670.0 253.0 0.2556411644586251
6346 0.8547243 364.0 399.0 1.8084131527816334
4381 0.1670403 103.0 94.0 1.1227523505313506
3385 -1.5470653 4486.5 1263.0 0.3422055940833762
19553 3.3874813 179.5 1122.5 10.464860510142211

Total number of rows: 22575

Table truncated, full table size 1056 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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