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GEO accession:
Sample GSM22375
Query DataSets for GSM22375
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 317
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 317 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=317;Tumor.type=D;Size=1.2;Grade=3;Nodes=1/10;ER=Pos;PR=Neg;HER2=Neg;Age=71;DFS=5;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.6156133
4297.0
2589.5
0.6526525148269904
6459
-0.5829873
824.0
326.0
0.6675802454541714
16790
-0.2432873
189.5
115.0
0.844818136608549
4210
0.0297703
127.5
101.0
1.020849619314753
13392
0.0328523
3659.0
3547.5
1.0230327699409463
1575
0.2636073
108.0
103.0
1.2004762913221
9300
0.3460233
158.0
143.5
1.2710515411461198
5306
0.0975163
149.0
118.0
1.0699293973180863
4514
-0.0104913
122.0
95.5
0.9927542393048353
8664
0.4909953
122.0
129.0
1.4054136382523859
1645
1.2605693
186.5
289.5
2.3959024309306627
13828
0.0799373
119.0
99.0
1.0569717819735116
3944
0.1217903
125.5
105.5
1.0880839937460478
500
-0.3474523
2091.0
1203.0
0.7859711417748154
21226
1.0173073
177.0
238.0
2.0241365490702776
15545
-1.9678083
1670.0
253.0
0.2556411644586251
6346
0.8547243
364.0
399.0
1.8084131527816334
4381
0.1670403
103.0
94.0
1.1227523505313506
3385
-1.5470653
4486.5
1263.0
0.3422055940833762
19553
3.3874813
179.5
1122.5
10.464860510142211
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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