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Sample GSM22376 Query DataSets for GSM22376
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 319
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 319 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=319;Tumor.type=D;Size=4;Grade=2;Nodes=1/13;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=44;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 1.5393573 3380.0 14537.0 2.906649110279081
6459 -0.0032613 786.0 554.0 0.9977422702001822
16790 -0.0502363 192.0 138.0 0.9657785556809887
4210 0.0300933 152.0 119.0 1.0210782190571213
13392 -0.3177213 2466.0 2082.0 0.8023363407837579
1575 0.5777553 293.0 307.0 1.4925250712049805
9300 0.2990133 183.0 166.0 1.2303027466818577
5306 0.2052373 172.0 148.0 1.1528753218166772
4514 -0.0577323 148.0 110.0 0.9607735201336157
8664 -0.1158723 158.0 112.0 0.922824409601292
1645 0.6741263 410.5 454.5 1.5956300414481301
13828 0.2113883 160.5 140.0 1.1578011701019766
3944 -0.0054783 151.5 116.0 0.9962101967768049
500 0.0024613 1580.5 1456.5 1.0017074871911635
21226 0.1789843 200.0 166.0 1.132086337802845
15545 -1.2795053 1232.0 359.0 0.41193685575492606
6346 0.2717183 344.0 291.0 1.2072441946335248
4381 0.2354883 142.5 128.5 1.1773049357837677
3385 -1.8891973 3060.5 761.5 0.26995725330299475
19553 0.5240943 158.0 169.0 1.4380301883186104

Total number of rows: 22575

Table truncated, full table size 1056 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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