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Sample GSM22377 Query DataSets for GSM22377
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 342
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 342 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=342;Tumor.type=D;Size=3;Grade=2;Nodes=9/21;ER=Pos;PR=Neg;HER2=Neg;Age=62;DFS=102;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.2436283 3324.0 1652.5 0.4223092169546302
6459 -1.2227383 812.0 284.0 0.4284688796161862
16790 -0.1985843 246.5 177.5 0.8714054255562544
4210 0.1903713 148.0 140.5 1.141057074143369
13392 0.1835753 2605.5 3867.5 1.135694400452771
1575 0.4988143 207.0 241.5 1.4130514963266814
9300 0.4379363 211.0 236.0 1.3546652297554755
5306 0.2605183 187.0 185.5 1.1979086687279685
4514 0.0545443 181.0 156.0 1.0385307981016136
8664 0.0668853 155.5 135.5 1.047452556075919
1645 0.4043113 282.0 307.0 1.323456631956281
13828 0.5443803 182.0 219.5 1.4583935096800262
3944 0.2903253 164.5 167.0 1.2229160141468296
500 -0.2400343 1853.0 1685.0 0.8467255645522018
21226 1.3292983 338.0 693.0 2.512802925472923
15545 -2.0030133 1286.0 260.0 0.24947849201453312
6346 -0.3525893 418.0 269.0 0.783177497461508
4381 0.1116003 162.0 145.5 1.0804260800134147
3385 -1.6006423 2503.5 834.0 0.32973014326248323
19553 0.8185693 201.0 292.5 1.7636552325276915

Total number of rows: 22575

Table truncated, full table size 1057 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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