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Sample GSM22379 Query DataSets for GSM22379
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 374
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 374 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=374;Tumor.type=D;Size=1;Grade=3;Nodes=0/15;ER=Pos (<10%);PR=Pos;HER2=Pos;Age=57;DFS=47;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 1.0583803 4789.0 10515.0 2.082592306429447
6459 -1.3366813 1128.0 270.0 0.3959304334158623
16790 0.1015153 292.0 200.0 1.0728993040767014
4210 0.0915843 170.0 124.0 1.065539799671941
13392 -0.0819963 4001.5 3293.0 0.9447497915008735
1575 0.7422213 218.5 235.0 1.6727485725001672
9300 0.5473703 248.5 232.0 1.4614186267271958
5306 0.1157363 190.0 138.5 1.0835273277417852
4514 -0.0508143 175.0 116.0 0.9653911756050952
8664 -0.0718703 176.0 115.0 0.951404093123295
1645 0.4949243 375.0 326.0 1.4092462931179215
13828 0.5612703 217.0 207.5 1.475567429926162
3944 0.0507253 172.0 122.0 1.035785427602933
500 -0.5114473 2648.0 1340.0 0.7015185694734138
21226 1.2433393 355.0 513.0 2.367458282562899
15545 -0.8270023 2093.0 765.0 0.5636992693487496
6346 0.9108433 469.0 535.0 1.8801431548454244
4381 0.1609143 131.0 104.0 1.117994907937589
3385 -1.5215333 5423.0 1527.0 0.348315720122107
19553 0.5252363 209.5 196.5 1.4391686425553678

Total number of rows: 22575

Table truncated, full table size 1061 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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