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GEO accession:
Sample GSM22381
Query DataSets for GSM22381
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 469
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 469 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=469;Tumor.type=D;Size=1;Grade=1;Nodes=0/19;ER=Pos;PR=Pos;HER2=Neg ;Age=66;DFS=161;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.3717733
4441.0
3756.0
0.7728321524288124
6459
0.0479043
998.0
588.0
1.0337618984441046
16790
0.4686763
783.0
589.5
1.3838386193468026
4210
-0.0776603
336.0
127.0
0.9475933575660486
13392
-0.1608653
3957.0
3800.0
0.8944886489360239
1575
0.5127413
775.0
603.0
1.4267584276895673
9300
0.7460243
421.0
316.0
1.6771646352997769
5306
0.0501833
302.0
123.5
1.0353961568283254
4514
-0.0293663
271.0
103.0
0.9798509258241859
8664
-0.2164863
322.0
109.0
0.8606592603186274
1645
0.7321963
1056.5
1151.0
1.6611659509711165
13828
0.2090193
328.5
153.5
1.1559018585873038
3944
-0.1363013
313.0
112.0
0.9098486644017884
500
-0.1767483
2456.0
1863.0
0.884694847023355
21226
0.6008623
328.0
206.5
1.5166223545848152
15545
-0.8537433
1931.5
720.0
0.55334717708101
6346
0.4149963
504.5
307.0
1.3332951304500087
4381
0.0736863
251.0
102.0
1.0524019623771903
3385
-1.7636393
5341.0
1496.0
0.2945044527074143
19553
0.5128633
313.0
182.5
1.426878660581791
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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