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Sample GSM22382 Query DataSets for GSM22382
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 518
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 518 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=518;Tumor.type=L;Size=5.5;Grade=2;Nodes=3/20;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=156;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.5385253 3109.0 4062.0 1.452486615943346
6459 -0.7607673 810.0 331.5 0.5901825231580435
16790 -0.8513883 151.0 76.0 0.5542514025718179
4210 -0.0572223 104.0 93.0 0.9611130335753844
13392 0.0919053 2560.5 2336.0 1.0657768848604674
1575 0.0363883 127.0 114.5 1.02554317800509
9300 0.1490213 156.0 144.0 1.1088164549954915
5306 0.5128353 126.0 152.5 1.426851070521082
4514 0.1672303 93.0 98.0 1.1229001570049786
8664 1.4218153 126.5 269.5 2.6792236973654138
1645 0.5213793 165.0 190.0 1.4353261119337146
13828 1.0372173 100.0 176.0 2.052264542084658
3944 -0.3098933 138.5 99.0 0.8067017302099797
500 -0.1378293 1768.0 1275.5 0.9088859621020494
21226 0.1682603 174.0 159.0 1.1237021751654974
15545 -0.6121323 1160.0 540.0 0.6542290421922066
6346 0.7915593 359.0 439.5 1.7309443534967077
4381 -0.0869253 150.5 121.0 0.9415273686013803
3385 -1.1050363 2998.5 1140.5 0.4648910135534314
19553 0.4465763 108.0 130.0 1.362801648334949

Total number of rows: 22575

Table truncated, full table size 1052 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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