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Sample GSM22383 Query DataSets for GSM22383
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 547
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 547 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=547;Tumor.type=D/L;Size=1.5;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=74;DFS=129;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.8546023 3685.0 10197.5 1.8082601678989099
6459 0.6247483 812.0 1122.0 1.541941727506059
16790 2.5084343 218.0 1003.0 5.690022103190266
4210 0.2800423 159.0 148.0 1.2142300517912712
13392 0.5339883 2865.0 5778.0 1.4479264869235688
1575 0.3827483 191.0 192.0 1.3038233220068274
9300 0.7377073 214.5 278.5 1.6675238038142313
5306 0.1509133 172.0 146.5 1.1102718595870231
4514 0.0689553 188.0 151.5 1.048956463935963
8664 -0.0641153 182.0 133.5 0.956531806193472
1645 1.1599663 267.0 474.0 2.234522271663346
13828 0.3917233 186.0 188.0 1.31195912815531
3944 2.9140953 171.5 1039.5 7.537548569932713
500 0.0232353 1809.0 2055.0 1.0162356106947559
21226 0.9076183 320.0 480.5 1.8759460230771585
15545 -1.1307543 1383.0 552.5 0.45667685895785626
6346 1.9099953 443.0 1424.0 3.7580786563908735
4381 0.1886513 139.0 121.0 1.1396974966269569
3385 -1.1713783 3204.0 1679.0 0.44399706056129656
19553 0.9081803 196.0 286.0 1.876676130198985

Total number of rows: 22575

Table truncated, full table size 1058 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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