NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM22384 Query DataSets for GSM22384
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 605
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 605 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=605;Tumor.type=D;Size=2.2;Grade=2;Nodes=6/18;ER=Pos;PR=Pos;HER2=Neg;Age=70;DFS=110;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.4583063 4018.0 1007.0 0.36392022365771665
6459 -0.4064793 817.0 355.0 0.7544626725769643
16790 1.1153023 197.0 256.0 2.1664028660326995
4210 0.2931283 145.0 116.5 1.2252938090883512
13392 -0.1909933 3200.5 2033.5 0.8760026245698483
1575 0.1604563 123.0 94.0 1.1176405900070963
9300 0.2479043 189.0 141.0 1.1874804140609423
5306 0.0290743 162.0 108.0 1.0203568166324486
4514 0.1410713 169.0 120.0 1.1027233337574212
8664 -0.0839973 143.0 91.0 0.943440166080243
1645 0.6889163 260.0 248.0 1.612071493904395
13828 0.1839803 147.0 110.0 1.1360131300562801
3944 -0.1108633 136.0 86.0 0.9260340471944484
500 -0.2053433 2041.0 1161.0 0.867332181092245
21226 1.0540793 207.0 257.0 2.0763918681745435
15545 -2.7760013 1375.0 115.5 0.1459958331054328
6346 -0.1743173 372.0 194.0 0.8861872160676721
4381 0.2334023 113.0 92.0 1.1756042385918906
3385 -1.5333903 3772.0 880.0 0.3454646621451309
19553 0.4744763 831.0 678.5 1.3894130077707143

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap