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Sample GSM22386 Query DataSets for GSM22386
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 633
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 633 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=633;Tumor.type=D;Size=2.7;Grade=3;Nodes=0/11;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.1951363 4014.0 4261.0 0.8734904648906042
6459 -0.0884103 913.0 693.0 0.9405587519594909
16790 0.5798503 442.0 481.0 1.4946942865584647
4210 0.0863543 140.0 104.0 1.0616833632602798
13392 -0.6503643 3909.5 2839.5 0.637119564560081
1575 0.3753213 227.0 203.0 1.2971283448430864
9300 0.3272893 199.0 172.0 1.2546530853034055
5306 -0.0127593 158.0 109.0 0.9911951520781396
4514 0.0116193 134.0 95.0 1.0080861100624374
8664 1.9353483 145.5 384.5 3.824702429449485
1645 1.0153743 453.0 688.0 2.0214270005722565
13828 0.2590823 139.0 116.0 1.1967169446840131
3944 -0.0936813 138.0 91.0 0.9371285135708585
500 -0.5997313 2031.0 1263.0 0.6598771212624988
21226 0.6789633 194.0 214.0 1.6009885704827727
15545 -2.6960523 1883.5 225.0 0.15431480380480786
6346 0.5347683 368.0 379.0 1.4487090218468872
4381 0.1430213 112.0 88.0 1.1042147983162192
3385 -1.9826303 4723.0 1245.0 0.2530282555100611
19553 0.0958573 159.0 118.0 1.0687000863130147

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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