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Sample GSM22387 Query DataSets for GSM22387
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 638
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 638 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=638;Tumor.type=D;Size=2;Grade=2;Nodes=1/24;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=148;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.0336803 3226.5 2454.5 0.48846258251044106
6459 0.7038613 790.0 1340.0 1.6288578671029796
16790 0.6075273 150.5 220.0 1.5236455414751906
4210 0.0366053 89.5 103.0 1.0256974676459465
13392 0.7816233 2415.5 7470.0 1.7190638763772377
1575 0.2720233 104.0 133.0 1.2075001157928658
9300 0.2091353 125.0 147.5 1.1559944740060142
5306 0.2976993 113.0 144.0 1.2291828035304555
4514 0.1768003 83.0 106.0 1.1303739946154574
8664 -0.2493823 102.0 95.5 0.8412568179969077
1645 0.4644283 156.0 207.0 1.3797698786767538
13828 0.2822363 90.0 120.0 1.2160784146666597
3944 0.0106683 95.0 106.0 1.0074221752749173
500 -0.5045223 1651.5 1444.0 0.7048937723897293
21226 0.4904233 170.0 226.0 1.4048570567522822
15545 -3.2632893 1146.0 106.0 0.1041482545133163
6346 -0.3380683 312.0 223.5 0.7911002824041623
4381 0.1558863 92.0 113.0 1.1141056256681
3385 -1.2548913 2964.0 1781.0 0.4190251666399787
19553 2.5288623 97.0 518.0 5.771162838104762

Total number of rows: 22575

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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