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Sample GSM22388 Query DataSets for GSM22388
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 648
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 648 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=648;Tumor.type=D;Size=1.1;Grade=2;Nodes=0/15;ER=Pos;PR=Pos;HER2=Neg;Age=62;DFS=160;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.5598723 4551.0 687.0 0.339181155320316
6459 -1.3143013 916.0 149.0 0.40212039502810326
16790 -0.0313713 311.0 147.0 0.9784901413863548
4210 0.4620333 144.0 119.0 1.3774813829413823
13392 0.4170953 3889.0 2905.0 1.3352363974099208
1575 0.5578663 255.0 181.0 1.472090233102191
9300 0.2980243 186.0 127.0 1.2294595387904317
5306 0.1088933 162.0 105.0 1.078400648824395
4514 0.2226503 150.5 107.0 1.1668752064043288
8664 -0.0353223 165.0 98.0 0.9758139927644026
1645 0.8368943 308.0 243.0 1.7862001461645496
13828 0.4264793 215.5 150.0 1.3439495203405192
3944 0.0127993 144.5 93.0 1.0089113109539418
500 -0.2473943 2243.5 781.0 0.8424169180393449
21226 0.8125613 330.5 252.0 1.7563264548243853
15545 -0.8346813 2129.0 457.5 0.5607071027426032
6346 0.1168063 388.5 187.0 1.0843318419188805
4381 0.3203393 120.5 99.0 1.248623809536446
3385 -1.2934003 4706.5 898.0 0.40798850201589615
19553 0.6370863 215.0 169.0 1.5551842879080684

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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