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Sample GSM22390 Query DataSets for GSM22390
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 655
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 655 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=655;Tumor.type=D;Size=2;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=143;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.2370463 4241.5 4634.0 0.848480871790174
6459 0.6673753 889.0 1093.0 1.588181151718255
16790 0.0794603 177.5 156.5 1.056622614628634
4210 0.1674323 92.0 104.0 1.1230579041082454
13392 0.2720363 3444.5 5296.5 1.2075110938730933
1575 0.5176383 96.0 131.0 1.431609061470793
9300 0.6670193 153.0 200.0 1.5877885982572404
5306 0.2292293 116.0 126.0 1.1722085584879594
4514 0.1758763 94.0 106.0 1.129650078008755
8664 0.6555313 101.0 147.0 1.5751951158599313
1645 0.4804723 191.5 212.0 1.3952004705740726
13828 0.1115173 98.0 105.0 1.080363455994135
3944 -0.0445113 109.0 103.0 0.969618613665171
500 -0.5115273 2132.0 1414.0 0.7014793561602759
21226 0.8652783 186.0 263.0 1.821690803698353
15545 -1.5567393 1566.5 390.0 0.3399185543468868
6346 1.4667243 368.5 722.0 2.7639364327505493
4381 0.4071273 95.0 122.0 1.3260429194620693
3385 -1.7396313 4384.5 1382.0 0.29944624171377077
19553 0.4518063 101.0 130.5 1.36775102172712

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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