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Sample GSM22391 Query DataSets for GSM22391
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 662
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 662 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=662;Tumor.type=D;Size=1;Grade=3;Nodes=6/11;ER=Pos;PR=Pos;HER2=Neg;Age=79;DFS=27;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.2677793 4355.0 4015.0 0.8305972120631047
6459 -0.4581983 1080.5 521.5 0.7278947754072451
16790 0.5784153 583.0 519.0 1.4932083398483245
4210 -0.0519003 284.5 124.0 0.9646650198106621
13392 0.4057243 3679.5 5527.0 1.324753629609723
1575 0.6564503 372.5 304.0 1.5761996414544033
9300 0.1207543 338.5 176.0 1.087302993820326
5306 -0.0864533 285.0 121.0 0.9418351790661371
4514 -0.0381793 224.0 94.0 0.9738834613596631
8664 0.6495983 275.0 205.0 1.568730774609659
1645 0.6261273 436.0 365.0 1.5434157670729478
13828 0.0657053 305.0 148.0 1.0465962543609435
3944 -0.1014123 260.0 107.0 0.9321203453569478
500 -0.4967113 2349.0 1456.0 0.7087204591012071
21226 0.5579783 309.0 221.0 1.4722041294690724
15545 -2.9911673 1794.0 129.0 0.1257676676174441
6346 -0.5019003 501.0 177.5 0.706175964772972
4381 0.1333633 197.0 92.0 1.0968475877833765
3385 -1.1001063 5064.0 2501.0 0.46648206177519885
19553 0.8779563 231.0 197.0 1.83776967921681

Total number of rows: 22575

Table truncated, full table size 1061 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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