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GEO accession:
Sample GSM22392
Query DataSets for GSM22392
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 687
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 687 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=687;Tumor.type=D;Size=3.5;Grade=3;Nodes=3/16;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=142;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.3518993
3262.0
4931.0
1.2762394257837997
6459
-0.2883203
750.0
409.0
0.8188549530550076
16790
-0.2163613
189.0
120.5
0.860733900959256
4210
0.3920473
146.0
143.0
1.312253691679064
13392
0.3772243
2351.5
3200.0
1.29883995583227
1575
0.4217183
189.5
182.0
1.3395220072048937
9300
0.3752963
248.0
224.0
1.2971059833767593
5306
0.4411333
156.0
156.0
1.3576699467230158
4514
0.4374083
160.0
159.0
1.3541693334617004
8664
-0.0211443
180.0
131.0
0.9854512521225375
1645
1.0953043
250.0
364.0
2.136580551529303
13828
0.3664033
190.0
176.0
1.2891346788779878
3944
0.1079833
158.0
127.5
1.077720133743646
500
-0.2957673
1877.0
1317.0
0.8146389607224813
21226
1.6440093
287.0
600.0
3.125331444914198
15545
-2.5211943
1246.0
145.0
0.17419874006899658
6346
0.4973403
415.0
392.5
1.411608168504572
4381
0.6726553
151.5
176.5
1.5940034946754837
3385
-1.1101353
2722.0
1123.5
0.4632507479190915
19553
0.8818853
182.0
237.0
1.8427820346885362
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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