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Sample GSM22392 Query DataSets for GSM22392
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 687
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 687 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=687;Tumor.type=D;Size=3.5;Grade=3;Nodes=3/16;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=142;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.3518993 3262.0 4931.0 1.2762394257837997
6459 -0.2883203 750.0 409.0 0.8188549530550076
16790 -0.2163613 189.0 120.5 0.860733900959256
4210 0.3920473 146.0 143.0 1.312253691679064
13392 0.3772243 2351.5 3200.0 1.29883995583227
1575 0.4217183 189.5 182.0 1.3395220072048937
9300 0.3752963 248.0 224.0 1.2971059833767593
5306 0.4411333 156.0 156.0 1.3576699467230158
4514 0.4374083 160.0 159.0 1.3541693334617004
8664 -0.0211443 180.0 131.0 0.9854512521225375
1645 1.0953043 250.0 364.0 2.136580551529303
13828 0.3664033 190.0 176.0 1.2891346788779878
3944 0.1079833 158.0 127.5 1.077720133743646
500 -0.2957673 1877.0 1317.0 0.8146389607224813
21226 1.6440093 287.0 600.0 3.125331444914198
15545 -2.5211943 1246.0 145.0 0.17419874006899658
6346 0.4973403 415.0 392.5 1.411608168504572
4381 0.6726553 151.5 176.5 1.5940034946754837
3385 -1.1101353 2722.0 1123.5 0.4632507479190915
19553 0.8818853 182.0 237.0 1.8427820346885362

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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