NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM22395 Query DataSets for GSM22395
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 772
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 772 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=772;Tumor.type=D;Size=2.5;Grade=2;Nodes=0/18;ER=Pos;PR=Pos;HER2=Neg;Age=68;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.1251933 2978.0 4764.0 0.9168814731766872
6459 0.4786173 595.0 798.0 1.3934068453113202
16790 -0.6739443 153.0 82.0 0.6267907893995179
4210 0.6824163 299.0 411.0 1.6048254899340613
13392 -0.3886993 2266.0 2619.5 0.7638181127292574
1575 0.1956033 119.0 116.0 1.1452027005367853
9300 0.4182323 145.0 162.0 1.3362890722673555
5306 0.2655693 136.5 138.0 1.2021100182565043
4514 -0.0324063 116.0 97.5 0.9777879772589766
8664 -0.0369613 125.0 104.0 0.9747061799169017
1645 0.3525803 147.5 157.5 1.276841808781185
13828 0.4982303 120.0 143.0 1.4124792872723875
3944 0.1094743 122.5 112.5 1.078835123898186
500 -0.6085063 1529.5 1247.5 0.6558754567403647
21226 1.0997933 187.0 335.0 2.1432399790737944
15545 -0.4777833 1066.0 820.0 0.718080437008527
6346 -0.2597343 254.0 176.5 0.8352419696983493
4381 0.3019453 107.0 113.0 1.2328051665762851
3385 -1.0329383 2758.5 2016.5 0.48871380805329795
19553 0.0971383 292.5 263.0 1.069649450554863

Total number of rows: 22575

Table truncated, full table size 1054 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap