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GEO accession:
Sample GSM22396
Query DataSets for GSM22396
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 823
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 823 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=823;Tumor.type=D;Size=2;Grade=2;Nodes=0/6;ER=Pos;PR=Pos;HER2=Neg;Age=51;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.0604553
3494.0
3825.0
1.0427944306386752
6459
0.4104473
759.0
658.0
1.3290973258530145
16790
0.1291533
193.0
162.5
1.0936516682504056
4210
0.7471563
236.0
286.0
1.678480859130754
13392
0.3794753
2435.0
3056.0
1.3008681947633334
1575
0.3847313
142.0
148.0
1.3056159361237731
9300
0.2952843
177.0
168.0
1.2271262929655644
5306
0.7833513
182.0
235.0
1.7211234021706248
4514
0.2730793
151.5
145.5
1.208383952420373
8664
0.0264103
148.0
122.0
1.0184743221171282
1645
0.2930873
211.5
195.0
1.2252590441167959
13828
0.1972863
148.0
136.0
1.1465393147523986
3944
0.5412883
222.5
238.5
1.4552709273403566
500
0.0062833
1876.0
1559.0
1.0043644556038978
21226
0.8449223
203.0
268.0
1.7961673405179472
15545
-2.6056623
1170.0
130.0
0.16429248669791735
6346
0.0902023
375.5
280.0
1.064519587614704
4381
0.6436393
145.0
177.5
1.5622649792144612
3385
-1.9693673
2989.0
590.0
0.2553651011195116
19553
0.8061643
139.0
190.0
1.7485562269532577
Total number of rows:
22575
Table truncated, full table size
1055 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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