NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM22396 Query DataSets for GSM22396
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 823
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 823 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=823;Tumor.type=D;Size=2;Grade=2;Nodes=0/6;ER=Pos;PR=Pos;HER2=Neg;Age=51;DFS=69;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.0604553 3494.0 3825.0 1.0427944306386752
6459 0.4104473 759.0 658.0 1.3290973258530145
16790 0.1291533 193.0 162.5 1.0936516682504056
4210 0.7471563 236.0 286.0 1.678480859130754
13392 0.3794753 2435.0 3056.0 1.3008681947633334
1575 0.3847313 142.0 148.0 1.3056159361237731
9300 0.2952843 177.0 168.0 1.2271262929655644
5306 0.7833513 182.0 235.0 1.7211234021706248
4514 0.2730793 151.5 145.5 1.208383952420373
8664 0.0264103 148.0 122.0 1.0184743221171282
1645 0.2930873 211.5 195.0 1.2252590441167959
13828 0.1972863 148.0 136.0 1.1465393147523986
3944 0.5412883 222.5 238.5 1.4552709273403566
500 0.0062833 1876.0 1559.0 1.0043644556038978
21226 0.8449223 203.0 268.0 1.7961673405179472
15545 -2.6056623 1170.0 130.0 0.16429248669791735
6346 0.0902023 375.5 280.0 1.064519587614704
4381 0.6436393 145.0 177.5 1.5622649792144612
3385 -1.9693673 2989.0 590.0 0.2553651011195116
19553 0.8061643 139.0 190.0 1.7485562269532577

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap