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Sample GSM22397 Query DataSets for GSM22397
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 829
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 829 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=829;Tumor.type=D;Size=1.2;Grade=2;Nodes=0/9;ER=Pos;PR=Pos;HER2=Neg ;Age=69;DFS=136;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.0825703 3963.0 1012.0 0.47218683047477145
6459 -0.1536983 844.0 279.0 0.8989432029906621
16790 -0.1730013 158.5 101.0 0.8869956746555078
4210 0.1718243 104.0 100.5 1.1264815532652628
13392 -1.3254113 2923.5 536.5 0.399035387592677
1575 0.3341463 112.0 112.0 1.260630968453217
9300 0.3300993 130.0 119.0 1.2570997278149654
5306 0.8482623 115.0 146.0 1.8003304150849317
4514 0.2093613 98.0 100.0 1.1561758450720592
8664 -0.1521563 105.5 86.5 0.8999047280567799
1645 0.2513183 178.0 132.0 1.1902936296278561
13828 0.1851223 101.0 100.0 1.1369128462425524
3944 0.1419303 112.0 102.0 1.1033800494462906
500 0.5925413 2009.0 1566.0 1.5079007225007102
21226 0.0613283 146.0 109.5 1.0434255994907862
15545 -1.0620023 1242.0 219.0 0.478966842813032
6346 -0.1162613 352.0 156.0 0.922575612980828
4381 0.5412043 89.0 113.0 1.45518676451427
3385 -1.9624713 3573.0 419.0 0.2565886245474681
19553 0.6457333 100.0 124.5 1.5645338462740164

Total number of rows: 22575

Table truncated, full table size 1048 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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