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Sample GSM22398 Query DataSets for GSM22398
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 843
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 843 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=843;Tumor.type=D;Size=3.4;Grade=2;Nodes=11/20;ER=Pos;PR=Neg;HER2=Neg;Age=76;DFS=122;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 1.5400183 2998.0 12626.5 2.9079808646527403
6459 -0.1716503 598.0 440.0 0.8878266348224422
16790 1.0837833 148.0 276.0 2.1195865353559586
4210 0.3389973 118.0 143.0 1.2648769759579643
13392 0.0642723 2871.5 3826.0 1.0455573087856536
1575 0.3411043 110.0 135.5 1.2667252410254473
9300 0.4407243 145.0 180.0 1.3572856829906852
5306 0.2606873 152.0 167.0 1.1980488429072667
4514 0.1512183 107.0 118.0 1.110506547675707
8664 0.2898753 114.0 135.0 1.2225343009414829
1645 0.7694153 195.0 286.0 1.7045786215551257
13828 2.7289383 119.5 668.5 6.629672096656452
3944 0.0633723 116.0 119.0 1.0449052895580284
500 0.2519123 1826.0 2453.0 1.1907841018577492
21226 0.3371473 179.0 201.0 1.2632556529130976
15545 -1.3481623 1322.5 450.0 0.3927920812731393
6346 0.0807283 456.0 399.0 1.0575513107010939
4381 0.1279833 115.0 123.0 1.0927651276494914
3385 1.0759463 2936.5 8622.5 2.108103829567823
19553 0.8759993 98.5 173.0 1.8352784014071408

Total number of rows: 22575

Table truncated, full table size 1054 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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