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Sample GSM22400 Query DataSets for GSM22400
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 856
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 856 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=856;Tumor.type=D;Size=1.6;Grade=2;Nodes=0/16;ER=Pos;PR=Pos;HER2=ND;Age=73;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.3787543 3064.0 2554.5 0.7691016186156351
6459 0.9961533 886.0 1376.0 1.994674227646874
16790 0.1787903 189.0 150.0 1.1319340146317347
4210 0.1800613 175.0 140.0 1.1329316545558041
13392 0.4025643 2561.0 3826.5 1.3218547581862181
1575 0.4590073 178.0 171.0 1.3745949468189407
9300 0.6098283 259.5 269.0 1.526077408030989
5306 0.3389303 188.0 166.0 1.2648183673389837
4514 0.3587733 167.0 151.0 1.2823347388153732
8664 -0.0332993 190.0 131.0 0.9771830477234877
1645 0.7600433 279.5 320.0 1.693541479169462
13828 0.2762963 193.5 163.5 1.2110813428775544
3944 0.2927973 263.0 220.0 1.225012740570799
500 -0.3126103 1876.0 1319.0 0.8051836837509707
21226 0.6985073 296.0 324.5 1.6228250144619403
15545 -1.1414313 1289.0 404.5 0.4533095846224468
6346 0.3221223 420.0 353.0 1.25016801229391
4381 0.5007143 165.5 164.5 1.4149137803194987
3385 -1.9382673 2535.0 522.0 0.26092970601207527
19553 0.7631043 179.5 211.0 1.6971384550630897

Total number of rows: 22575

Table truncated, full table size 1056 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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