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Sample GSM22401 Query DataSets for GSM22401
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 868
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 868 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=868;Tumor.type=D;Size=3;Grade=3;Nodes=0/13;ER=Pos;PR=Pos;HER2=Neg;Age=65;DFS=130;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.1409013 4030.0 2182.0 0.906952752438512
6459 -1.1675973 923.0 190.0 0.44516224815051253
16790 -0.8560223 200.5 74.5 0.5524739828744976
4210 -0.1069463 148.0 94.0 0.9285514204168102
13392 -1.2016643 3897.0 927.0 0.4347735773743054
1575 0.3261983 136.5 114.0 1.2537052383521434
9300 -0.0331523 153.0 100.0 0.9772827608902007
5306 0.5108553 168.5 145.0 1.424894662517129
4514 0.1560653 109.0 90.5 1.1142440400753586
8664 2.1163263 134.0 317.0 4.335884271137921
1645 0.0113263 198.0 121.0 1.0078812506237766
13828 0.0928663 132.0 98.0 1.0664868454601668
3944 0.5478383 214.0 174.5 1.461893516771247
500 -0.1753153 2308.0 1085.0 0.8855743483459714
21226 0.1893093 189.0 130.0 1.1402177340913655
15545 -2.8957123 1728.0 107.0 0.1343704343464111
6346 -0.2375123 348.0 155.0 0.84820687760661
4381 0.9429463 425.0 380.0 1.9224504736856727
3385 -1.3834183 4847.0 1050.0 0.38330962133326985
19553 3.3234703 111.0 570.0 10.010690085296961

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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