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Sample GSM22402 Query DataSets for GSM22402
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 871
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 871 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=871;Tumor.type=D;Size=4;Grade=3;Nodes=0/16;ER=Pos;PR=Pos;HER2=Neg;Age=61;DFS=6;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.8967633 3961.0 7567.0 1.8618842646022289
6459 1.2062583 957.5 1499.0 2.307383223920183
16790 -0.7728643 214.0 97.0 0.5852545292966945
4210 0.8597863 263.0 308.0 1.814769390747428
13392 0.1751413 3628.5 3842.0 1.1290750795285458
1575 0.4966203 145.5 156.5 1.4109037030756375
9300 0.1826923 166.5 143.0 1.1349999082318076
5306 0.4521843 164.5 166.5 1.3681102250707355
4514 0.2409663 115.0 114.5 1.1817837683162145
8664 -0.1217883 144.0 108.0 0.9190478347226972
1645 -0.0637313 188.5 135.0 0.9567867726765814
13828 0.0785123 139.0 118.5 1.0559285778946612
3944 0.2695223 161.0 147.0 1.2054080147267585
500 -0.4531333 2155.0 1171.5 0.7304549257957502
21226 0.7396643 188.0 219.0 1.6697871601896725
15545 -1.6526403 1626.0 312.0 0.318057547579743
6346 -0.4716743 362.0 173.0 0.7211272479961102
4381 1.5975813 457.5 830.0 3.026354208953234
3385 -1.6708983 4509.0 1159.0 0.31405782665898346
19553 0.8427003 225.0 268.5 1.7934037540914203

Total number of rows: 22575

Table truncated, full table size 1058 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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