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Sample GSM22403 Query DataSets for GSM22403
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 878
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 878 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=878;Tumor.type=D/L;Size=1.6;Grade=2;Nodes=0/9;ER=Pos;PR=Neg;HER2=Neg;Age=76;DFS=138;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.4399553 4559.0 4883.0 1.3565617102189043
6459 -0.6505153 922.0 256.0 0.6370526562034929
16790 1.1958303 210.0 229.0 2.2907653746165577
4210 0.4252633 246.0 161.5 1.3428169913952444
13392 0.0656483 3722.0 2777.5 1.0465552440587897
1575 0.2376043 149.0 103.0 1.17903297078385
9300 0.2090413 208.0 126.0 1.1559193058938537
5306 0.1876803 159.5 104.5 1.1389305593770707
4514 0.1119283 149.0 96.0 1.0806712414428865
8664 -0.1503193 134.0 78.0 0.9010510746943842
1645 0.1921253 319.5 171.0 1.142445384569311
13828 0.1876683 139.0 96.0 1.138921644731521
3944 -0.1181463 128.5 77.5 0.9213710036865048
500 -0.5447793 2344.0 904.0 0.685496562544823
21226 0.8216273 228.0 194.0 1.7673983349823106
15545 -2.6237593 1652.5 116.5 0.16224447227985547
6346 0.0933873 425.0 203.0 1.0668717756419495
4381 0.0620463 110.5 78.5 1.043945141552785
3385 -1.7769513 4909.5 895.0 0.29179936514804405
19553 1.0860203 271.0 262.0 2.1228753663513373

Total number of rows: 22575

Table truncated, full table size 1055 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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