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GEO accession:
Sample GSM22404
Query DataSets for GSM22404
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1037
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1037 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1037;Tumor.type=D/L;Size=1.5;Grade=2;Nodes=0/4;ER=Pos;PR=Pos;HER2=Neg ;Age=85;DFS=83;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.9330063
4510.0
9918.0
1.9092504919306712
6459
-1.4943623
1048.5
267.5
0.35493770121764323
16790
-0.7773623
217.0
85.0
0.5834326596600832
4210
0.2465723
203.0
161.0
1.1863848493458975
13392
-0.7210183
3996.0
2456.0
0.6066691974512438
1575
0.3556313
125.5
108.5
1.2795449579490095
9300
0.4568803
223.0
205.0
1.3725698738513659
5306
0.0102853
158.0
107.0
1.0071541855175365
4514
0.0694643
153.0
108.0
1.049326581031785
8664
0.2284573
142.0
112.0
1.1715812126819443
1645
-0.0364103
322.5
212.0
0.9750782798492348
13828
-0.0014903
157.0
105.5
0.9989676821179302
3944
-0.0780843
139.5
89.5
0.9473146803033151
500
-0.3683623
2205.0
1563.0
0.7746617785135298
21226
0.9583343
237.0
311.0
1.943065078610292
15545
-1.0676283
1883.0
745.5
0.47710280132125266
6346
0.2683673
428.0
357.0
1.2044433542087338
4381
0.1776183
112.0
86.5
1.1310147450350871
3385
-1.7677223
5039.0
1456.5
0.2936720601462142
19553
2.0580603
164.5
463.0
4.1642605578170935
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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