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Sample GSM22404 Query DataSets for GSM22404
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1037
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1037 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1037;Tumor.type=D/L;Size=1.5;Grade=2;Nodes=0/4;ER=Pos;PR=Pos;HER2=Neg ;Age=85;DFS=83;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.9330063 4510.0 9918.0 1.9092504919306712
6459 -1.4943623 1048.5 267.5 0.35493770121764323
16790 -0.7773623 217.0 85.0 0.5834326596600832
4210 0.2465723 203.0 161.0 1.1863848493458975
13392 -0.7210183 3996.0 2456.0 0.6066691974512438
1575 0.3556313 125.5 108.5 1.2795449579490095
9300 0.4568803 223.0 205.0 1.3725698738513659
5306 0.0102853 158.0 107.0 1.0071541855175365
4514 0.0694643 153.0 108.0 1.049326581031785
8664 0.2284573 142.0 112.0 1.1715812126819443
1645 -0.0364103 322.5 212.0 0.9750782798492348
13828 -0.0014903 157.0 105.5 0.9989676821179302
3944 -0.0780843 139.5 89.5 0.9473146803033151
500 -0.3683623 2205.0 1563.0 0.7746617785135298
21226 0.9583343 237.0 311.0 1.943065078610292
15545 -1.0676283 1883.0 745.5 0.47710280132125266
6346 0.2683673 428.0 357.0 1.2044433542087338
4381 0.1776183 112.0 86.5 1.1310147450350871
3385 -1.7677223 5039.0 1456.5 0.2936720601462142
19553 2.0580603 164.5 463.0 4.1642605578170935

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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