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Sample GSM22405 Query DataSets for GSM22405
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1045
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1045 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1045;Tumor.type=D;Size=2.5;Grade=3;Nodes=1/12;ER=Pos;PR=Neg;HER2=Pos;Age=73;DFS=121;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.0638703 3132.0 3783.0 0.9566945861828384
6459 -0.5168783 745.5 398.0 0.6988827814514882
16790 -0.6405963 165.5 84.0 0.641447866153116
4210 0.1384013 150.0 128.0 1.1006843071509678
13392 0.5001923 2281.5 3927.5 1.4144019714119347
1575 0.3324183 130.0 128.0 1.2591221569609365
9300 0.4906013 175.0 186.0 1.4050298465262476
5306 0.4757813 161.0 170.5 1.390670566695181
4514 0.0649003 132.0 109.0 1.0460125287767135
8664 0.6945263 144.0 178.0 1.618352681408546
1645 0.0012023 196.0 149.0 1.0008336764148507
13828 0.0082303 142.0 112.0 1.0057212508704976
3944 -0.0007893 141.5 111.0 0.9994533598050146
500 -0.0993253 1645.0 1576.0 0.9334694232502297
21226 0.2813193 183.5 169.0 1.215305147875059
15545 -1.7605063 1053.0 235.0 0.2951446104163419
6346 1.0522463 352.0 547.0 2.073755264653495
4381 0.4129133 135.0 139.5 1.3313710161009324
3385 0.2947983 2718.0 4188.0 1.2267134401382627
19553 0.7219013 264.5 324.5 1.6493544638623692

Total number of rows: 22575

Table truncated, full table size 1054 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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