GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22406
Query DataSets for GSM22406
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1047
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1047 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1047;Tumor.type=D/L;Size=2.6;Grade=2;Nodes=0/18;ER=Pos;PR=Neg;HER2=Neg;Age=70;DFS=128;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.2925333
4757.0
1642.0
0.8164674896362503
6459
0.4835923
1115.0
457.0
1.3982207039767227
16790
1.3040693
597.0
446.0
2.469242638784016
4210
-0.1903543
286.0
106.0
0.8763907376523917
13392
0.1612543
3463.0
1505.0
1.118259028511465
1575
0.3518593
436.5
195.0
1.2762043999282278
9300
0.2197753
386.0
165.0
1.164551607804391
5306
0.3733093
284.0
146.0
1.2953204061302945
4514
0.0405613
322.0
131.0
1.0285136325042323
8664
-0.0660993
302.0
118.0
0.9552174977888896
1645
0.8025873
675.5
360.0
1.7442261505580285
13828
0.1767963
326.0
143.0
1.1303704622954367
3944
-0.0331153
301.0
120.0
0.97730812393791
500
0.4938603
2641.0
1336.5
1.4082072916494888
21226
0.2047873
302.0
138.0
1.152515840193407
15545
-1.4773173
1828.5
194.0
0.3591561581181204
6346
-0.5127603
508.5
130.0
0.7008804791764967
4381
0.2550383
243.0
123.0
1.1933672899290675
3385
-1.2849983
5210.0
792.0
0.4103713692996633
19553
0.4119083
320.0
162.0
1.3304446091044242
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|