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Sample GSM22406 Query DataSets for GSM22406
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1047
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1047 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1047;Tumor.type=D/L;Size=2.6;Grade=2;Nodes=0/18;ER=Pos;PR=Neg;HER2=Neg;Age=70;DFS=128;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.2925333 4757.0 1642.0 0.8164674896362503
6459 0.4835923 1115.0 457.0 1.3982207039767227
16790 1.3040693 597.0 446.0 2.469242638784016
4210 -0.1903543 286.0 106.0 0.8763907376523917
13392 0.1612543 3463.0 1505.0 1.118259028511465
1575 0.3518593 436.5 195.0 1.2762043999282278
9300 0.2197753 386.0 165.0 1.164551607804391
5306 0.3733093 284.0 146.0 1.2953204061302945
4514 0.0405613 322.0 131.0 1.0285136325042323
8664 -0.0660993 302.0 118.0 0.9552174977888896
1645 0.8025873 675.5 360.0 1.7442261505580285
13828 0.1767963 326.0 143.0 1.1303704622954367
3944 -0.0331153 301.0 120.0 0.97730812393791
500 0.4938603 2641.0 1336.5 1.4082072916494888
21226 0.2047873 302.0 138.0 1.152515840193407
15545 -1.4773173 1828.5 194.0 0.3591561581181204
6346 -0.5127603 508.5 130.0 0.7008804791764967
4381 0.2550383 243.0 123.0 1.1933672899290675
3385 -1.2849983 5210.0 792.0 0.4103713692996633
19553 0.4119083 320.0 162.0 1.3304446091044242

Total number of rows: 22575

Table truncated, full table size 1056 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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