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GEO accession:
Sample GSM22408
Query DataSets for GSM22408
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1093
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1093 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1093;Tumor.type=D;Size=1;Grade=3;Nodes=1/14;ER=Pos;PR=Pos;HER2=Neg ;Age=66;DFS=85;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4758193
4774.0
3805.0
0.7190584653140041
6459
0.7353913
982.0
1107.0
1.6648482893769108
16790
-0.7704803
232.0
87.0
0.5862225407265911
4210
0.4047383
244.5
194.0
1.3238486154825204
13392
-0.1354733
3884.0
3778.0
0.9103710072794962
1575
0.2517203
158.0
121.0
1.190625859586241
9300
0.6633393
228.0
216.0
1.58374354486505
5306
-0.0123093
181.0
114.5
0.991504490075363
4514
0.0505053
166.0
111.0
1.0356273921014345
8664
-0.0728463
161.5
100.5
0.9507603570031351
1645
0.6309873
259.0
237.5
1.5486240384450753
13828
0.2431973
180.0
134.0
1.18361278694223
3944
0.5907383
373.0
328.0
1.5060168780322492
500
-0.3262273
2245.0
1486.5
0.7976197338733804
21226
1.4974943
241.0
398.0
2.8235191436387415
15545
-1.3170623
1823.0
480.0
0.4013515413855294
6346
0.8387873
439.0
462.0
1.7885455818438898
4381
0.2113553
135.0
104.0
1.1577747388196955
3385
-1.2703633
4928.5
2039.5
0.4145553902940766
19553
1.2636503
163.5
238.0
2.401024057179436
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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