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Sample GSM22408 Query DataSets for GSM22408
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1093
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1093 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1093;Tumor.type=D;Size=1;Grade=3;Nodes=1/14;ER=Pos;PR=Pos;HER2=Neg ;Age=66;DFS=85;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.4758193 4774.0 3805.0 0.7190584653140041
6459 0.7353913 982.0 1107.0 1.6648482893769108
16790 -0.7704803 232.0 87.0 0.5862225407265911
4210 0.4047383 244.5 194.0 1.3238486154825204
13392 -0.1354733 3884.0 3778.0 0.9103710072794962
1575 0.2517203 158.0 121.0 1.190625859586241
9300 0.6633393 228.0 216.0 1.58374354486505
5306 -0.0123093 181.0 114.5 0.991504490075363
4514 0.0505053 166.0 111.0 1.0356273921014345
8664 -0.0728463 161.5 100.5 0.9507603570031351
1645 0.6309873 259.0 237.5 1.5486240384450753
13828 0.2431973 180.0 134.0 1.18361278694223
3944 0.5907383 373.0 328.0 1.5060168780322492
500 -0.3262273 2245.0 1486.5 0.7976197338733804
21226 1.4974943 241.0 398.0 2.8235191436387415
15545 -1.3170623 1823.0 480.0 0.4013515413855294
6346 0.8387873 439.0 462.0 1.7885455818438898
4381 0.2113553 135.0 104.0 1.1577747388196955
3385 -1.2703633 4928.5 2039.5 0.4145553902940766
19553 1.2636503 163.5 238.0 2.401024057179436

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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