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GEO accession:
Sample GSM22410
Query DataSets for GSM22410
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1205
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1205 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1205;Tumor.type=D;Size=2.7;Grade=2;Nodes=1/19;ER=Pos;PR=Pos;HER2=Neg ;Age=71;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.2847763
3107.0
4071.0
0.8208692835187268
6459
0.2318463
883.0
1204.0
1.174336765786671
16790
0.7944423
186.5
283.5
1.7344068062761935
4210
0.3096273
149.0
153.0
1.2393873985254933
13392
-0.6082773
2354.5
2202.0
0.6559794645582557
1575
-0.0003133
200.0
170.0
0.9997830665554714
9300
0.3611953
227.5
258.0
1.2844894941571807
5306
-0.1171663
167.0
127.0
0.9219971325478309
4514
0.0597153
132.0
111.0
1.042259714926175
8664
0.1943183
156.0
148.0
1.1441828613353726
1645
1.6472983
256.0
779.5
3.132463711365399
13828
0.1850933
175.0
167.5
1.1368901359204875
3944
0.1846803
211.5
208.0
1.1365646520228305
500
-0.5590393
1603.5
1397.0
0.6787541422386867
21226
0.4717943
249.0
311.0
1.3868329965155601
15545
-3.2090753
1217.0
125.0
0.10813643611489812
6346
0.1118253
409.0
424.5
1.080594618683436
4381
0.0545693
143.0
121.0
1.038548483069252
3385
-1.6003813
2638.0
1161.5
0.3297898166910594
19553
1.6190543
141.5
381.5
3.0717348264860784
Total number of rows:
22575
Table truncated, full table size
1057 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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