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Sample GSM22410 Query DataSets for GSM22410
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1205
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1205 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1205;Tumor.type=D;Size=2.7;Grade=2;Nodes=1/19;ER=Pos;PR=Pos;HER2=Neg ;Age=71;DFS=88;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.2847763 3107.0 4071.0 0.8208692835187268
6459 0.2318463 883.0 1204.0 1.174336765786671
16790 0.7944423 186.5 283.5 1.7344068062761935
4210 0.3096273 149.0 153.0 1.2393873985254933
13392 -0.6082773 2354.5 2202.0 0.6559794645582557
1575 -0.0003133 200.0 170.0 0.9997830665554714
9300 0.3611953 227.5 258.0 1.2844894941571807
5306 -0.1171663 167.0 127.0 0.9219971325478309
4514 0.0597153 132.0 111.0 1.042259714926175
8664 0.1943183 156.0 148.0 1.1441828613353726
1645 1.6472983 256.0 779.5 3.132463711365399
13828 0.1850933 175.0 167.5 1.1368901359204875
3944 0.1846803 211.5 208.0 1.1365646520228305
500 -0.5590393 1603.5 1397.0 0.6787541422386867
21226 0.4717943 249.0 311.0 1.3868329965155601
15545 -3.2090753 1217.0 125.0 0.10813643611489812
6346 0.1118253 409.0 424.5 1.080594618683436
4381 0.0545693 143.0 121.0 1.038548483069252
3385 -1.6003813 2638.0 1161.5 0.3297898166910594
19553 1.6190543 141.5 381.5 3.0717348264860784

Total number of rows: 22575

Table truncated, full table size 1057 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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