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Sample GSM22411 Query DataSets for GSM22411
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1206
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1206 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1206;Tumor.type=D;Size=4.1;Grade=3;Nodes=0/15;ER=Pos;PR=Neg;HER2=Neg;Age=84;DFS=56;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.9139463 4130.0 3132.0 0.5307313628656768
6459 -0.0670463 814.5 832.0 0.9545902992020466
16790 -0.2355493 272.5 210.0 0.8493614638644518
4210 0.1696083 149.0 142.0 1.124752730148718
13392 0.4782433 3439.0 7386.5 1.3930456548767194
1575 0.3319583 172.0 189.0 1.2587201857152521
9300 0.4011093 187.0 219.0 1.320522450676569
5306 -0.0059693 170.0 145.0 0.9958714494844394
4514 -0.1035103 162.5 128.0 0.9307658258513046
8664 0.3501083 155.0 170.0 1.2746557856880187
1645 2.7440733 327.0 2369.0 6.6995911161302155
13828 1.0847353 175.0 337.5 2.1209865015942193
3944 0.0595653 160.0 142.0 1.0421516177499188
500 -0.5999583 2117.0 1749.5 0.6597731106486756
21226 0.9137483 251.0 448.0 1.88393321561006
15545 -1.0858293 1706.0 926.0 0.47112149418439037
6346 0.4384843 363.0 479.0 1.3551799925438532
4381 0.1644293 132.5 123.5 1.1207226502339274
3385 0.1682333 4186.5 7385.0 1.1236812213227276
19553 1.8598843 177.0 607.0 3.6297847789407105

Total number of rows: 22575

Table truncated, full table size 1061 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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