GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22415
Query DataSets for GSM22415
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1304
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1304 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1304;Tumor.type=D;Size=2;Grade=3;Nodes=0/14;ER=Pos;PR=Pos;HER2=Neg;Age=57;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
0.4902853
4128.0
8482.0
1.4047223382089085
6459
0.2905173
906.5
852.5
1.2230787292521605
16790
-0.6684053
212.0
89.0
0.6292018413250636
4210
0.1037963
168.0
120.0
1.0745972684308764
13392
-0.8617223
3494.0
2198.0
0.5502951760273178
1575
0.3477913
143.0
122.0
1.2726110004530433
9300
0.3818193
218.0
184.0
1.3029840942087563
5306
0.1696833
172.0
128.0
1.1248112928848415
4514
-0.0071363
150.0
101.0
0.9950657675578007
8664
-0.0922993
158.0
100.0
0.9380267272035531
1645
0.2786473
276.0
216.0
1.2130565127981923
13828
0.0876603
170.0
120.0
1.0626452484120417
3944
0.5216773
212.0
197.0
1.4356227182067416
500
-0.3050703
1638.0
1192.0
0.809402747874802
21226
0.5994313
244.5
239.0
1.5151189494819743
15545
-1.9500103
1707.0
326.0
0.25881448787018085
6346
0.7414713
435.5
490.0
1.6718801836878767
4381
0.3127393
129.0
109.0
1.24206342138539
3385
-1.7526853
4843.5
1655.5
0.2967490063409305
19553
0.4658103
153.0
140.0
1.3810921909930896
Total number of rows:
22575
Table truncated, full table size
1059 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
