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Sample GSM22415 Query DataSets for GSM22415
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1304
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1304 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1304;Tumor.type=D;Size=2;Grade=3;Nodes=0/14;ER=Pos;PR=Pos;HER2=Neg;Age=57;DFS=20;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.4902853 4128.0 8482.0 1.4047223382089085
6459 0.2905173 906.5 852.5 1.2230787292521605
16790 -0.6684053 212.0 89.0 0.6292018413250636
4210 0.1037963 168.0 120.0 1.0745972684308764
13392 -0.8617223 3494.0 2198.0 0.5502951760273178
1575 0.3477913 143.0 122.0 1.2726110004530433
9300 0.3818193 218.0 184.0 1.3029840942087563
5306 0.1696833 172.0 128.0 1.1248112928848415
4514 -0.0071363 150.0 101.0 0.9950657675578007
8664 -0.0922993 158.0 100.0 0.9380267272035531
1645 0.2786473 276.0 216.0 1.2130565127981923
13828 0.0876603 170.0 120.0 1.0626452484120417
3944 0.5216773 212.0 197.0 1.4356227182067416
500 -0.3050703 1638.0 1192.0 0.809402747874802
21226 0.5994313 244.5 239.0 1.5151189494819743
15545 -1.9500103 1707.0 326.0 0.25881448787018085
6346 0.7414713 435.5 490.0 1.6718801836878767
4381 0.3127393 129.0 109.0 1.24206342138539
3385 -1.7526853 4843.5 1655.5 0.2967490063409305
19553 0.4658103 153.0 140.0 1.3810921909930896

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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