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Sample GSM22416 Query DataSets for GSM22416
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1343
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1343 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1343;Tumor.type=D;Size=2.5;Grade=3;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=79;DFS=21;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.1215523 4272.0 1520.0 0.9191985377902482
6459 0.2898623 943.5 373.0 1.2225235939913326
16790 3.2814883 224.0 805.0 9.723584961680503
4210 0.7382483 224.0 198.0 1.6681488111651754
13392 1.1338773 3783.0 3554.0 2.194477257562572
1575 0.4245593 132.0 124.0 1.3421625599122244
9300 0.0974803 151.0 112.0 1.069902861248426
5306 0.8410223 147.5 165.0 1.7913190167302862
4514 0.2580413 103.0 99.0 1.1958538408074773
8664 -0.3071163 127.0 82.0 0.8082556249112347
1645 0.2363933 186.0 135.5 1.1780438920787089
13828 0.0193423 132.5 100.0 1.0134974101403202
3944 0.3166003 228.0 159.0 1.2453924619757262
500 0.4914283 2361.0 1121.0 1.4058352265043361
21226 0.0779273 204.0 131.0 1.0555005567651758
15545 -1.2800323 1695.0 224.0 0.4117863838196828
6346 0.1051363 369.0 187.0 1.0755959410665883
4381 0.4883293 115.0 119.0 1.4028195541789374
3385 -1.0728173 4380.0 719.0 0.47538992904834015
19553 1.0952163 765.5 522.5 2.1364505093510173

Total number of rows: 22575

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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