GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22418
Query DataSets for GSM22418
Status
Public on Jun 07, 2004
Title
microdissected breast cancer cells from case 1368
Sample type
RNA
Channel 1
Source name
RNA from microdissected breast cancer cells from case 1368 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1368;Tumor.type=D;Size=2.6;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg ;Age=82;DFS=63;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
Feb 12, 2015
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1378
breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.3086523
4814.0
1112.0
0.40369791808591293
6459
1.2473913
1150.0
1236.5
2.374116434011877
16790
2.1206393
219.0
451.5
4.348864129668674
4210
1.5225883
168.0
264.5
2.873059762268592
13392
0.7936393
4344.0
5911.0
1.7334413619288886
1575
0.3410113
121.0
112.0
1.2666440828879386
9300
0.3598123
166.0
136.0
1.2832586760784475
5306
0.8917683
150.0
172.0
1.855449123995262
4514
0.2678033
106.0
100.0
1.2039732494895183
8664
-0.3565263
130.0
80.0
0.7810432203049734
1645
0.2601063
204.0
146.0
1.1975668405581712
13828
0.0563573
149.0
108.0
1.039836509316098
3944
-0.0093103
151.0
105.0
0.9935674967486228
500
-0.1576973
2510.0
1164.0
0.8964552023327961
21226
0.6446303
209.0
184.5
1.5633381885536006
15545
-2.8914573
2271.5
127.0
0.13476732538208164
6346
0.5696663
390.5
272.0
1.4841795520689716
4381
1.3334243
444.5
480.0
2.5200007909360744
3385
-1.1468433
5467.0
1557.0
0.45161246585829457
19553
0.6522843
109.0
125.0
1.5716540148455749
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
