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Sample GSM22418 Query DataSets for GSM22418
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1368
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1368 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1368;Tumor.type=D;Size=2.6;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg ;Age=82;DFS=63;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.3086523 4814.0 1112.0 0.40369791808591293
6459 1.2473913 1150.0 1236.5 2.374116434011877
16790 2.1206393 219.0 451.5 4.348864129668674
4210 1.5225883 168.0 264.5 2.873059762268592
13392 0.7936393 4344.0 5911.0 1.7334413619288886
1575 0.3410113 121.0 112.0 1.2666440828879386
9300 0.3598123 166.0 136.0 1.2832586760784475
5306 0.8917683 150.0 172.0 1.855449123995262
4514 0.2678033 106.0 100.0 1.2039732494895183
8664 -0.3565263 130.0 80.0 0.7810432203049734
1645 0.2601063 204.0 146.0 1.1975668405581712
13828 0.0563573 149.0 108.0 1.039836509316098
3944 -0.0093103 151.0 105.0 0.9935674967486228
500 -0.1576973 2510.0 1164.0 0.8964552023327961
21226 0.6446303 209.0 184.5 1.5633381885536006
15545 -2.8914573 2271.5 127.0 0.13476732538208164
6346 0.5696663 390.5 272.0 1.4841795520689716
4381 1.3334243 444.5 480.0 2.5200007909360744
3385 -1.1468433 5467.0 1557.0 0.45161246585829457
19553 0.6522843 109.0 125.0 1.5716540148455749

Total number of rows: 22575

Table truncated, full table size 1056 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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