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Sample GSM22419 Query DataSets for GSM22419
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1370
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1370 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1370;Tumor.type=D;Size=2;Grade=2;Nodes=ND;ER=Pos;PR=Pos;HER2=Neg;Age=73;DFS=61;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.9883193 3863.0 1129.0 0.5040646357700639
6459 -0.6023233 921.0 265.0 0.6586922998367329
16790 1.6193303 191.0 301.5 3.0723234999261972
4210 1.3338753 254.5 314.5 2.5207884088618826
13392 0.7697403 3154.0 3649.0 1.70496269603608
1575 0.4142543 125.0 113.5 1.3326094307833745
9300 0.5177053 170.0 146.0 1.4316756306272294
5306 0.3140353 138.0 114.0 1.2431800075837038
4514 0.2389273 120.0 100.5 1.1801143535883711
8664 -0.1844533 121.0 80.0 0.8799827529619619
1645 0.1466933 189.0 126.5 1.1070291965430563
13828 0.0569323 127.0 94.0 1.0402514920193038
3944 0.0416733 201.0 124.0 1.029306467312196
500 0.3320853 2370.0 1709.0 1.2588314206848767
21226 1.0607543 198.0 222.0 2.0860211066020526
15545 -2.2054253 1454.0 139.5 0.21682084336578245
6346 0.6900703 353.0 273.0 1.6133615747991112
4381 2.0822233 265.5 517.0 4.234592439311023
3385 -1.6098613 3669.0 635.0 0.3276299028596299
19553 2.8805993 118.0 452.0 7.3645600207307735

Total number of rows: 22575

Table truncated, full table size 1053 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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