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Sample GSM22420 Query DataSets for GSM22420
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1389
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1389 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1389;Tumor.type=D;Size=1.7;Grade=2;Nodes=0/1;ER=Pos;PR=Pos;HER2=Neg;Age=80;DFS=94;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -1.1474873 4352.0 2238.0 0.4514107995458011
6459 -1.6975423 924.0 208.0 0.3083109646444919
16790 -0.7379273 213.0 109.0 0.5996002833707125
4210 -0.0229563 133.5 117.5 0.9842138305979716
13392 0.5361413 3398.0 6504.0 1.4500884691745535
1575 0.3018673 150.0 157.5 1.2327382794224047
9300 0.4471713 213.5 230.5 1.3633638687674487
5306 0.4004063 172.0 187.0 1.319879670958867
4514 0.0844633 137.5 128.5 1.0602927966285043
8664 -0.0764003 138.5 117.0 0.9484213465769178
1645 1.1359033 251.0 413.5 2.1975602658858544
13828 0.1945053 151.5 148.5 1.1443313468631935
3944 -0.0216043 148.0 127.5 0.9851366125354271
500 -0.6940513 2225.0 1258.0 0.6181158977309296
21226 1.4692353 242.0 498.5 2.7687496899027653
15545 -3.1253973 1701.0 141.0 0.11459395543778271
6346 -0.3501863 399.0 236.0 0.7844827537298447
4381 0.3549033 137.0 151.5 1.2788995419393399
3385 -1.4473633 4012.5 1534.5 0.3666910854249117
19553 0.3870913 142.0 159.0 1.3077535617830334

Total number of rows: 22575

Table truncated, full table size 1059 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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