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Sample GSM22422 Query DataSets for GSM22422
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1419
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1419 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1419;Tumor.type=D;Size=2.5;Grade=2;Nodes=1/8;ER=Pos;PR=Pos;HER2=Neg;Age=59;DFS=86;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 -0.1577323 4063.0 2786.0 0.896433447010075
6459 -1.0007393 859.0 218.0 0.49974396904761154
16790 0.8356333 409.0 368.0 1.7846393123031576
4210 -0.0645793 156.5 86.0 0.9562244027287848
13392 0.4336063 3461.0 3617.5 1.3506052897911194
1575 0.3736153 467.5 305.0 1.295595259898446
9300 0.1902213 194.5 120.0 1.1409386615006845
5306 -0.1315063 167.5 87.0 0.9128779900276308
4514 -0.1624073 154.0 80.0 0.8935331354354524
8664 0.3367803 160.5 112.5 1.2629343799585457
1645 0.4423223 380.5 260.0 1.3587898339848647
13828 0.4864703 162.0 124.5 1.4010125424269373
3944 -0.2494973 141.0 71.0 0.8411894438526265
500 -0.6899073 2147.0 822.0 0.6198937799301039
21226 1.3053423 218.0 274.0 2.4714233825989784
15545 -0.0699853 2557.0 1658.0 0.9526481163094366
6346 0.0114423 385.0 196.0 1.0079628455594685
4381 0.0475543 117.0 74.0 1.0335112185154403
3385 -1.2054473 4208.0 1277.0 0.4336351049583407
19553 0.2957593 108.0 81.0 1.227530307607006

Total number of rows: 22575

Table truncated, full table size 1054 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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