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Sample GSM22423 Query DataSets for GSM22423
Status Public on Jun 07, 2004
Title microdissected breast cancer cells from case 1437
Sample type RNA
 
Channel 1
Source name RNA from microdissected breast cancer cells from case 1437 labeled with Cy5
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name human universal reference RNA (Stratagene) labeled with Cy3
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Highly enriched breast cancer cells procured by LCM.
Clinical information: Sample.ID=1437;Tumor.type=D;Size=1.7;Grade=2;Nodes=2/22;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=89;Status=non-recur
Keywords = breast cancer, tamoxifen, recurrence
 
Submission date May 07, 2004
Last update date Feb 12, 2015
Contact name Xiao-Jun Ma
E-mail(s) xma@aviaradx.com
Organization name AviaraDx, Inc.
Lab Bioinformatics
Street address 2715 Loker Ave. W.
City Carlsbad
State/province CA
ZIP/Postal code 92010
Country USA
 
Platform ID GPL1223
Series (1)
GSE1378 breast cancer / tamoxifen monotherapy (microdissected tumor biopsies)

Data table header descriptions
ID_REF
VALUE log ratio (log2 of PRE_VALUE)
RefRawSignal Raw Cy3 intensity
ExpRawSignal Raw Cy5 intensity
PRE_VALUE Normalized ratio of Cy5/Cy3

Data table
ID_REF VALUE RefRawSignal ExpRawSignal PRE_VALUE
2508 0.9277583 5319.0 8734.0 1.9023167810026553
6459 -0.5746243 1041.0 378.5 0.6714611503310418
16790 -0.4782443 200.0 106.0 0.7178508594215558
4210 0.5030203 207.0 195.0 1.4171768992853406
13392 -0.4577623 4284.5 2243.5 0.7281148482813085
1575 0.2300763 119.0 112.5 1.1728970604844131
9300 0.0842133 158.5 125.5 1.060109191277039
5306 0.5306523 165.0 168.0 1.444582218462836
4514 0.0209153 119.5 100.0 1.0146024389596637
8664 0.0288983 125.0 103.5 1.020232295967481
1645 0.3064973 201.0 169.5 1.2367013084850853
13828 0.1597163 129.0 114.0 1.1170671007021458
3944 -0.0461863 151.0 112.5 0.9684931118523262
500 -0.3538113 2507.5 1239.5 0.7825143704240038
21226 0.6428903 186.0 196.0 1.5614543228759712
15545 -0.8250373 1907.0 606.0 0.5644679143926216
6346 -0.3486383 380.0 184.0 0.7853251402740675
4381 0.7575893 207.0 227.5 1.6906626385949606
3385 -1.8338703 5716.5 1091.5 0.2805111429962844
19553 2.1307003 358.0 856.0 4.379300524184493

Total number of rows: 22575

Table truncated, full table size 1057 Kbytes.




Supplementary data files not provided
Raw data included within Sample table
Processed data included within Sample table

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