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GEO accession:
Sample GSM22452
Query DataSets for GSM22452
Status
Public on Jun 07, 2004
Title
whole tissue section from case 140
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 140 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=140;Tumor.type=L;Size=>2.0;Grade=2;Nodes=18/28;ER=Pos;PR=Pos;HER2=Neg;Age=63;DFS=43;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4206373
3370.0
3915.0
0.747094604978144
6459
-1.2836293
654.5
267.0
0.4107608367979958
16790
0.9602143
159.5
274.5
1.9455991340993712
4210
-0.1790533
140.5
103.5
0.8832828784038496
13392
0.4868163
2569.0
5629.0
1.401349126937807
1575
-0.3130033
157.0
106.0
0.8049644218307751
9300
1.1696313
157.0
315.0
2.249541032468345
5306
0.1089363
148.0
135.0
1.0784324604530462
4514
-0.0670133
100.0
78.0
0.9546122108241736
8664
0.6158993
136.0
178.0
1.5325123219529024
1645
-0.0380653
162.0
134.0
0.9739607044447044
13828
1.8073693
120.0
372.0
3.5000339919228125
3944
0.0126113
200.0
176.0
1.0087797108440275
500
-0.8813423
1843.5
1370.5
0.5428622859286074
21226
-0.1436843
169.0
130.0
0.9052045060941634
15545
-3.0290683
1203.0
146.5
0.12250665626971209
6346
0.2703103
329.0
381.0
1.2060669749983695
4381
-0.1419343
151.0
115.0
0.9063033358297561
3385
1.1393783
2829.5
10111.0
2.2028597748917247
19553
1.0701453
210.0
410.0
2.09964369060533
Total number of rows:
22575
Table truncated, full table size
1056 Kbytes
.
Supplementary data files not provided
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