GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22459
Query DataSets for GSM22459
Status
Public on Jun 07, 2004
Title
whole tissue section from case 317
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 317 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=317;Tumor.type=D;Size=1.2;Grade=3;Nodes=1/10;ER=Pos;PR=Neg;HER2=Neg;Age=71;DFS=5;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-1.1583863
4184.5
2209.0
0.4480134951767606
6459
-0.4997343
863.5
522.0
0.707237323798304
16790
0.3688593
238.0
253.0
1.2913310675136667
4210
0.0946023
125.5
115.0
1.0677708018116852
13392
0.1627013
3944.0
5913.0
1.1193809033857225
1575
0.4902243
125.0
149.0
1.4046627003290704
9300
0.6897383
186.0
248.0
1.6129904161484192
5306
-0.0211053
143.0
120.0
0.985477506441393
4514
-0.1722703
107.0
83.5
0.8874451784215444
8664
0.7129483
129.0
178.0
1.6391506413211048
1645
1.4916733
228.0
526.0
2.812149032139615
13828
1.4039793
152.0
332.0
2.6463048199222756
3944
-0.1765153
121.0
93.0
0.8848375928798018
500
-0.0655693
2020.0
2065.0
0.9555682708720575
21226
-0.0514693
172.0
139.5
0.9649529474342061
15545
-2.0316903
1814.0
390.0
0.24456835990734907
6346
0.1711853
386.0
357.0
1.125983217548574
4381
-0.0814333
86.0
73.0
0.9451185726501538
3385
1.3633683
4707.0
18493.0
2.5728519271808454
19553
4.1546633
110.0
1616.5
17.81058007626841
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
