GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM22460
Query DataSets for GSM22460
Status
Public on Jun 07, 2004
Title
whole tissue section from case 319
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 319 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=319;Tumor.type=D;Size=4;Grade=2;Nodes=1/13;ER=Pos;PR=Pos;HER2=Neg;Age=67;DFS=44;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.4034983
4656.0
4136.0
0.756022815790056
6459
0.2699063
822.0
934.5
1.2057290806825487
16790
-0.0806883
190.0
181.0
0.9456063356948656
4210
0.2854463
100.5
131.0
1.218786575003985
13392
1.5440763
3664.0
13442.0
2.9161713837077468
1575
0.4024783
99.0
139.5
1.3217762395789379
9300
1.0897973
239.0
483.0
2.1284403466598913
5306
0.0237643
121.0
130.0
1.0166080777307849
4514
0.2464293
98.5
125.5
1.1862670363356629
8664
1.8587183
106.5
385.5
3.6268517498157387
1645
0.4993513
213.0
294.5
1.413577719844794
13828
2.4289673
99.0
526.0
5.385077554882199
3944
0.6822913
146.0
236.0
1.6046860754137198
500
0.3498203
2834.0
4050.5
1.2744020284414936
21226
1.1150923
171.0
362.5
2.1660878308197646
15545
-2.3775573
1672.5
300.5
0.1924349539120293
6346
3.1171953
443.0
3743.5
8.676989898434712
4381
0.8361973
177.0
311.0
1.7853377130010224
3385
1.6027283
4356.0
17096.0
3.0371714067453692
19553
0.2023683
93.0
116.0
1.1505851381362064
Total number of rows:
22575
Table truncated, full table size
1060 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
