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GEO accession:
Sample GSM22462
Query DataSets for GSM22462
Status
Public on Jun 07, 2004
Title
whole tissue section from case 356
Sample type
RNA
Channel 1
Source name
RNA from whole tissue section of case 356 labeled with Cy5
Organism
Homo sapiens
Extracted molecule
total RNA
Channel 2
Source name
human universal reference RNA (Stratagene) labeled with Cy3
Organism
Homo sapiens
Extracted molecule
total RNA
Description
whole tissue section of breast cancer.
Clinical information: Sample.ID=356;Tumor.type=D;Size=1;Grade=2;Nodes=2/20;ER=Pos (<10%);PR=Neg;HER2=Pos;Age=58;DFS=24;Status=recur
Keywords = breast cancer, tamoxifen, recurrence
Submission date
May 07, 2004
Last update date
May 27, 2005
Contact name
Xiao-Jun Ma
E-mail(s)
xma@aviaradx.com
Organization name
AviaraDx, Inc.
Lab
Bioinformatics
Street address
2715 Loker Ave. W.
City
Carlsbad
State/province
CA
ZIP/Postal code
92010
Country
USA
Platform ID
GPL1223
Series (1)
GSE1379
breast cancer / tamoxifen monotherapy (whole tissue tumor biopsies)
Data table header descriptions
ID_REF
VALUE
log ratio (log2 of PRE_VALUE)
RefRawSignal
Raw Cy3 intensity
ExpRawSignal
Raw Cy5 intensity
PRE_VALUE
Normalized ratio of Cy5/Cy3
Data table
ID_REF
VALUE
RefRawSignal
ExpRawSignal
PRE_VALUE
2508
-0.8160323
4955.0
4978.0
0.5680021843194529
6459
-1.5001893
970.0
443.0
0.35350716260383397
16790
0.2011683
201.0
276.0
1.1496289907078707
4210
0.3631763
137.0
207.0
1.2862539616629851
13392
0.4678353
3910.0
9883.0
1.3830326834468785
1575
0.1269043
95.0
120.0
1.091947518432688
9300
0.8158943
220.5
472.0
1.760388959104166
5306
-0.0267223
120.0
137.0
0.9816482725186192
4514
-0.0229853
118.0
135.0
0.9841941615880059
8664
0.2812073
105.5
149.0
1.215211064215594
1645
0.2181533
205.5
286.0
1.1632432809041995
13828
3.8102673
95.0
1640.0
14.028283704679785
3944
0.4781563
122.0
199.0
1.3929619307647143
500
-0.3125573
2746.5
3643.0
0.8052133332487326
21226
-0.1671993
169.0
177.0
0.8905699393109769
15545
-0.9621013
1830.0
1394.0
0.5133088600835981
6346
-0.2258773
392.0
413.0
0.8550752979434495
4381
0.2559433
115.0
160.0
1.1941161461094887
3385
1.2987493
5222.0
24315.5
2.4601538435360615
19553
0.7841053
270.0
572.0
1.7220239991606596
Total number of rows:
22575
Table truncated, full table size
1062 Kbytes
.
Supplementary data files not provided
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