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Sample GSM224622 Query DataSets for GSM224622
Status Public on Jun 27, 2008
Title T2_TG1_CD29LCD24H
Sample type RNA
 
Source name mammary tumor
Organism Mus musculus
Characteristics Balb/C
Extracted molecule total RNA
Extraction protocol PicoPure RNA isolation kit
Label Biotin
Label protocol mRNA amplification and labeling using a T7 global amplification method (Two-cycle Target Labeling kit; Affymetrix)
 
Hybridization protocol Affymetrix Hybridization
Scan protocol GeneChip Scanner
Description For tumors: TG1 means transplantation generation 1. H means high, L means low. Therefore, CD29HCD24H means CD29 high, CD24 high; CD29HCD24L means CD29 high, CD24 low; CD29LCD24H means CD29 low, CD24 high; CD29LCD24L means CD29 low, CD24 low.

For normal: MEC means mammary epithelial cell. CD29highCD24positive from normal MEC is shortened to CD29HCD24P(MEC), CD29positiveCD24high from normal is shortened to CD29PCD24H(MEC), and CD24low from normal is shortened to CD24L(MEC).
Data processing GCOS-calculated probe set signal intensities
 
Submission date Aug 23, 2007
Last update date Aug 28, 2018
Contact name Mei Zhang
Organization name Baylor College of Medicine
Street address One Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL1261
Series (1)
GSE8863 Mouse mammary tumor-initiating cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE GCOS
ABS_CALL
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1098.77 P 0.000753643
AFFX-BioB-M_at 1605.38 P 0.000753643
AFFX-BioB-3_at 1191.73 P 5.16732e-05
AFFX-BioC-5_at 3486.06 P 0.0012475
AFFX-BioC-3_at 3960.82 P 4.42873e-05
AFFX-BioDn-5_at 8184.15 P 4.42873e-05
AFFX-BioDn-3_at 15015.9 P 0.000146581
AFFX-CreX-5_at 43737.8 P 5.16732e-05
AFFX-CreX-3_at 46917.8 P 4.42873e-05
AFFX-DapX-5_at 33.7819 A 0.41138
AFFX-DapX-M_at 31.4131 A 0.455413
AFFX-DapX-3_at 9.78939 A 0.843268
AFFX-LysX-5_at 2.62217 A 0.937087
AFFX-LysX-M_at 7.56377 A 0.897835
AFFX-LysX-3_at 9.06999 A 0.195266
AFFX-PheX-5_at 3.6802 A 0.988616
AFFX-PheX-M_at 4.04036 A 0.9273
AFFX-PheX-3_at 61.256 A 0.250796
AFFX-ThrX-5_at 14.2076 A 0.897835
AFFX-ThrX-M_at 5.19211 A 0.910522

Total number of rows: 45101

Table truncated, full table size 1363 Kbytes.




Supplementary file Size Download File type/resource
GSM224622.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM224622.CHP.gz 246.6 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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